PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00055491-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 388aa    MW: 42791.4 Da    PI: 6.0425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00055491-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.8e-122695246
                      SSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqk 46
                        W+ eEde+l+++++  G+                           +W++Ia+ +  gRt++++k++w +
  PSME_00055491-RA 26 SFWSREEDEKLANYIRNNGNLggwsyvakqadnghcvndkqldatfgRWSLIAAQLS-GRTDNELKNYWKS 95
                      56*****************99************************************.***********75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.93720101IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-1523101IPR009057Homeodomain-like
SMARTSM007172.5E-92499IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-102598IPR009057Homeodomain-like
PfamPF139212.5E-528100No hitNo description
CDDcd001672.56E-72894No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MRYTQGQGVI SEDIPSTPSK RMLKKSFWSR EEDEKLANYI RNNGNLGGWS YVAKQADNGH  60
CVNDKQLDAT FGRWSLIAAQ LSGRTDNELK NYWKSCIKKK LNLKHNLSAG SSSSQSNFTD  120
TKSHIPTQSN SNLVSVQYAH DVLTSSQSSQ KYLDGIPEGS QAPNKAFNIL NSCKNPLCVQ  180
GVMELKHKQV HDQTDHEFSV DTDLTNGQGI CYPNLWTNAS SIHIHESFSN PAAFISPSLH  240
AKSSTCCSTT LATHETPCFP DISQLGSTGI NIPALIIESD SSKGKLENDE NHITCIDYSN  300
ETDSSDIVDP GAYTSHEENF NDSLNYLSYD INFQGVAAYI DISYLLPPIK EAMKANPFPT  360
LIERRGANGL FETETKCRAG DGQVTTRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.33e-17myb domain protein 55